2023 - 2024 Selected Publications

Prof. Dr. Erdem Karabulut

• Circadian Rhythms Characteristics of Nurses Providing Direct Patient Care: An Observational Study, İ Dolu, S Açıkgöz, AR Demirbaş, E Karabulut, Safety and Health at Work 15 (1), 102-109, 2024
• The spectrum of side effects associated with COVID-19 vaccines in patients with inborn errors of immunity C Özdemiral, NN Cevik, G Yavuz, O Gormez, AB Zengin, S Esenboga, E Karabulut, D Cagdas, Clinical Immunology 259, 109878, 2024
• A Methodological Research on Radiogenomics: Combining Radiomics and Genomics for Classification, M KAŞIKCI, E Coşgun, E Karabulut, Journal of Biostatistics 16 (1), 2024
• Biomarker detection using corrected degree of domesticity in hybrid social network feature selection for improving classifier performance, HY Zengin, E Karabulut, BMC bioinformatics 24 (1), 407, 2023
• voomSOM: voom-based Self-Organizing Maps for Clustering RNASequencing Data, A Cephe, N Koçhan, GE Zararsız, V Eldem, E Coşgun, E Karabulut, ..., Current Bioinformatics 18 (2), 154-169, 2023

Assist. Prof. İdil Yet 

• A comparative urinary proteomic and metabolomic analysis between renal aa amyloidosis and membranous nephropathy with clinicopathologic correlations, DA Ozbek, SC Koc, NE Özkan, SE Kablan, I Yet, M Uner, N Ozlu, ..., Journal of Proteomics 293, 105064, 2024
• Comparing the melissopalynological and next generation sequencing (NGS) methods for the determining of botanical origin of honey, A Özkök, HA Bilgic, C Kosukcu, G Arık, D Canlı, I Yet, C Karaaslan, Food Control 148, 109630, 4, 2023
• Plasma proteomic analysis reveals the potential role of Lectin and Alternative Complement pathways in IgA Vasculitis Pathogenesis, S Demir, I Yet, M Sardan Ekiz, E Sag, Y Bilginer, O Celikbicak, I Lay, ..., Diagnostics 13 (10), 1729, 3, 2023
• Multiomics Integration at Single-Cell Resolution Using Bayesian Networks: A Case Study in Hepatocellular Carcinoma, M Jihad, İ Yet, Omics: a journal of integrative biology 27 (1), 24-33, 1, 2023

Assist. Prof. Gülşah Merve Kılınç

• Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean, D Koptekin, E Yüncü, R Rodríguez-Varela, NE Altınışık, N Psonis, ..., Current Biology 33 (1), 41-57. e15       15, 2023
• The genetic history of Scandinavia from the Roman Iron Age to the present, Cell 186 (1), 32-46. e19, 12, 2023

Prof. Dr. Tunca Doğan

• Mutual annotation‐based prediction of protein domain functions with Domain2GO, E Ulusoy, T Doğan, Protein Science 33 (6), e4988, 2024
• An integrative framework for clinical diagnosis and knowledge discovery from exome sequencing data, M Shojaei, N Mohammadvand, T Doğan, C Alkan, RÇ Atalay, AC Acar, Computers in Biology and Medicine 169, 107810, 2024
• ASCARIS: Positional feature annotation and protein structure-based representation of single amino acid variations, F Cankara, T Doğan, Computational and Structural Biotechnology Journal 21, 4743-4758, 2023
• Democratizing knowledge representation with BioCypher, S Lobentanzer, P Aloy, J Baumbach, B Bohar, VJ Carey, P Charoentong, K Danhauser, T Doğan ..., Nature Biotechnology, 1-4 21, 2023
• UniProt: the Universal Protein knowledgebase in 2023, Nucleic Acids Research 51 (D1), D523-D531, 1716,2023

Assist. Prof. Arda Çetinkaya

• Decreased calcium permeability caused by biallelic TRPV5 mutation leads to autosomal recessive renal calcium-wasting hypercalciuria, N Guleray Lafci, M van Goor, S Cetinkaya, J van der Wijst, M Acun, ..., European Journal of Human Genetics, 1-9, 1, 2024